???msg.participant.card.label??? :
???msg.participant.card.lastName.label??? : Benzoni
???msg.participant.card.firstName.label??? : Francesca
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- PAPUA NIUGINI
- Shore-based sampling (Mon Nov 05 00:00:00 UTC 2012 - Fri Dec 14 00:00:00 UTC 2012)
- ( University of Milano-Bicocca)
- Leg 2. Coastal sampling (Sat Nov 10 00:00:00 UTC 2012 - Fri Nov 23 00:00:00 UTC 2012)
- ( University of Milano-Bicocca)
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Anker A. & Benzoni F. 2023. Hidden in plain sight: two new species of decapod crustaceans (Palaemonidae and Porcellanidae) discovered in the Red Sea on a university campus in Saudi Arabia. Zootaxa 5278(1): 78-102. DOI:10.11646/zootaxa.5278.1.3
???msg.biblio.abstract.label??? [+] [-]Two new symbiotic species of decapod crustaceans, a palaemonid shrimp and a porcellanid crab, are described from the same type locality situated on the campus of the King Abdullah University of Science and Technology (KAUST) in Thuwal, on the Red Sea coast of Saudi Arabia. The palaemonid shrimp Palaemonella jamila sp. nov. is described based on one male and one female, whereas the porcellanid crab Enosteoides habibi sp. nov. is described based on three males and two females. Unfortunately, the originally collected and studied specimens were lost shortly after study. However, subsequent recollection of one specimen of P. jamila sp. nov. and one specimen of E. habibi sp. nov. enabled to deposit a holotype of each new species in the collections of the Florida Museum of Natural History, Gainesville, USA. Both species inhabit burrows of goby-associated snapping shrimps, Alpheus spp., in the shallow subtidal areas, at depths less than 1 m. In addition, a single female specimen of Palaemonella aliska Marin, 2008 collected at Al Fahal reef off KAUST represents the first record of the species in the Red Sea and the Indian Ocean, and a considerable range extension of its previously known distribution range. This species may be a close relative of P. jamila sp. nov., to which it is also ecologically similar. The present study highlights the necessity of prospecting the largely neglected and still undersampled shallow subtidal habitats of the Red Sea, and the Indo-West Pacific in general.
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Anker A., Vimercati S., Barreca F., Marchese F., Chimienti G., Terraneo T.I., Rodrigue M., Eweida A.A., Qurban M., Duarte C.M., Pieribone V. & Benzoni F. 2023. Mesophotic and Bathyal Palaemonid Shrimp Diversity of the Red Sea, with the Establishment of Two New Genera and Two New Species. Diversity 15(10): 1028. DOI:10.3390/d15101028
???msg.biblio.abstract.label??? [+] [-]The diversity and evolution of the Red Sea invertebrates in mesophotic and deep-water benthic ecosystems remain largely unexplored. The Palaemonidae is a diversified family of caridean shrimps with numerous taxa in need of taxonomic revisions based on recent molecular analyses. The Red Sea mesophotic and bathyal palaemonid shrimps are largely unstudied. During recent expeditions off the Red Sea coast of Saudi Arabia, several palaemonid specimens were collected at a depth range of 88–494 m, spanning the mesophotic and bathyal zones. This material was examined morphologically and genetically to infer phylogenetic relationships among the Red Sea taxa and several other palaemonid genera. The concordant morphological and genetic data led to the description of two new genera and two new species. Moreover, one species was recorded in the Red Sea for the first time, with a new host record, whereas three further deep-water species, which do not occur in the Red Sea, were formally transferred to a different genus. As more exploration efforts are deployed, research on the diversity and evolutionary relationships among marine invertebrates from the Red Sea will further underline the uniqueness of its mesophotic and bathyal fauna.
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Arrigoni R., Terraneo T.I., Galli P. & Benzoni F. 2014. Lobophylliidae (Cnidaria, Scleractinia) reshuffled: Pervasive non-monophyly at genus level. Molecular Phylogenetics and Evolution 73: 60-64. DOI:10.1016/j.ympev.2014.01.010
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Arrigoni R., Richards Z.T., Chen C.A., Baird A.H. & Benzoni F. 2014. Taxonomy and phylogenetic relationships of the coral genera Australomussa and Parascolymia (Scleractinia, Lobophylliidae). Contributions to Zoology 83(3): 195-215
???msg.biblio.abstract.label??? [+] [-]Novel micromorphological characters in combination with molecular studies have led to an extensive revision of the taxonomy and systematics of scleractinian corals. In the present work, we investigate the macro- and micromorphology and the phylogenetic position of the genera Australomussa and Parascolymia, two monotypic genera ascribed to the family Lobophylliidae. The molecular phylogeny of both genera was addressed using three markers, the partial mitochondrial COI gene and the nuclear histone H3 and the ribosomal ITS region. Based on molecular data, Australomussa and Parascolymia belong to the Lobophylliidae and they cluster together with the genera Lobophyllia and Symphyllia within the same clade. While A. rowleyensis and P. vitiensis are closely related based on the three gene regions examined, their macro and micromorphology suggest that these species are distinct, differing in several characters, such as continuity and thickness of the costosepta, the number of septa, septal tooth height, spacing, and shape, and the distribution and shape of granules. Thus, we revise the taxonomic status of the genus Australomussa as a junior synonym of Parascolymia.
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Arrigoni R., Berumen M.L., Chen C.A., Terraneo T.I., Baird A.H., Payri C. & Benzoni F. 2016. Species delimitation in the reef coral genera Echinophyllia and Oxypora (Scleractinia, Lobophylliidae) with a description of two new species. Molecular Phylogenetics and Evolution 105: 146-159. DOI:10.1016/j.ympev.2016.08.023
???msg.biblio.abstract.label??? [+] [-]Scleractinian corals are affected by environment-induced phenotypic plasticity and intraspecific morphological variation caused by genotype. In an effort to identify new strategies for resolving this taxonomic issue, we applied a molecular approach for species evaluation to two closely related genera, Echinophyllia and Oxypora, for which few molecular data are available. A robust multi-locus phylogeny using DNA sequence data across four loci of both mitochondrial (COI, ATP6-NAD4) and nuclear (histone H3, ITS region) origin from 109 coral colonies was coupled with three independent putative species delimitation methods based on barcoding threshold (ABGD) and coalescence theory (PTP, GMYC). Observed overall congruence across multiple genetic analyses distinguished two traditional species (E. echinoporoides and O. convoluta), a species complex composed of E. aspera, E. orpheensis, E. tarae, and O. glabra, whereas O. lacera and E. echinata were indistinguishable with the sequenced loci. The combination of molecular species delimitation approaches and skeletal character observations allowed the description of two new reef coral species, E. bulbosa sp. n. from the Red Sea and E. gallii sp. n. from the Maldives and Mayotte. This work demonstrated the efficiency of multi-locus phylogenetic analyses and recently developed molecular species delimitation approaches as valuable tools to disentangle taxonomic issues caused by morphological ambiguities and to re-assess the diversity of scleractinian corals.
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Arrigoni R., Vacherie B., Benzoni F., Stefani F., Karsenti E., Jaillon O., Not F., Nunes F., Payri C., Wincker P. & Barbe V. 2017. A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications. Molecular Ecology Resources 17(5): 1054-1071. DOI:10.1111/1755-0998.12640
???msg.biblio.abstract.label??? [+] [-]Scleractinian corals (i.e. hard corals) play a fundamental role in building and maintaining coral reefs, one of the most diverse ecosystems on Earth. Nevertheless, their phylogenies remain largely unresolved and little is known about dispersal and survival of their planktonic larval phase. The small subunit ribosomal RNA (SSU rRNA) is a commonly used gene for DNA barcoding in several metazoans, and small variable regions of SSU rRNA are widely adopted as barcode marker to investigate marine plankton community structure worldwide. Here, we provide a large sequence data set of the complete SSU rRNA gene from 298 specimens, representing all known extant reef coral families and a total of 106 genera. The secondary structure was extremely conserved within the order with few exceptions due to insertions or deletions occurring in the variable regions. Remarkable differences in SSU rRNA length and base composition were detected between and within acroporids (Acropora, Montipora, Isopora and Alveopora) compared to other corals. The V4 and V9 regions seem to be promising barcode loci because variation at commonly used barcode primer binding sites was extremely low, while their levels of divergence allowed families and genera to be distinguished. A time-calibrated phylogeny of Scleractinia is provided, and mutation rate heterogeneity is demonstrated across main lineages. The use of this data set as a valuable reference for investigating aspects of ecology, biology, molecular taxonomy and evolution of scleractinian corals is discussed.
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Arrigoni R., Berumen M.L., Mariappan K.G., Beck P.S.A., Hulver A.M., Montano S., Pichon M., Strona G., Terraneo T.I. & Benzoni F. 2020. Towards a rigorous species delimitation framework for scleractinian corals based on RAD sequencing: the case study of Leptastrea from the Indo-Pacific. Coral Reefs 39(4): 1001-1025. DOI:10.1007/s00338-020-01924-8
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Arrigoni R., Huang D., Berumen M.L., Budd A.F., Montano S., Richards Z.T., Terraneo T.I. & Benzoni F. 2021. Integrative systematics of the scleractinian coral genera Caulastraea , Erythrastrea and Oulophyllia. Zoologica Scripta 50(4): 509-527. DOI:10.1111/zsc.12481
???msg.biblio.abstract.label??? [+] [-]Abstract Modern systematics integrating molecular and morphological data has greatly improved our understanding of coral evolutionary relationships during the last two decades and led to a deeply revised taxonomy of the order Scleractinia. The family Merulinidae (Cnidaria: Scleractinia) was recently subjected to a series of revisions following this integrated approach but the phylogenetic affinities of several genera ascribed to it remain unknown. Here, we partially fill this gap through the study of 89 specimens belonging to all 10 valid species from four genera ( Caulastraea , Erythrastrea , Oulophyllia and Dipsastraea ) collected from 14 localities across the Indo‐Pacific realm. Four molecular loci (histone H3, COI, ITS and IGR) were sequenced, and a total of 44 skeletal morphological characters (macromorphology, micromorphology and microstructure) were analysed. Molecular phylogenetic analyses revealed that the phaceloid Caulastraea species are split into two distinct lineages. A species previously ascribed to the genus Dipsastraea , Dipsastraea maxima , is also recovered in one on these lineages. Furthermore, Erythrastrea is nested within Oulophyllia . The molecular reconstructions of evolutionary relationships are further corroborated by multiscale morphological evidence. To resolve the taxonomy of these genera, Astraeosmilia is resurrected to accommodate Astraeosmilia connata , Astraeosmilia curvata , Astraeosmilia tumida and Astraeosmilia maxima, with Caulastraea retaining Caulastraea furcata and Caulastraea echinulata . Based on the examination of type material, Erythrastrea flabellata is considered an objective synonym of Lobophyllia wellsi , which is transferred to Oulophyllia following the obtained morpho‐molecular results. This work further confirms that an integrated morpho‐molecular approach based on a rigorous phylogenetic framework is fundamental for an objective classification that reflects the evolutionary history of scleractinian corals.
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Arrigoni R., Stolarski J., Terraneo T.I., Hoeksema B.W., Berumen M.L., Payri C., Montano S. & Benzoni F. 2023. Phylogenetics and taxonomy of the scleractinian coral family Euphylliidae. Contributions to Zoology 92(2): 130-171. DOI:10.1163/18759866-bja10041
???msg.biblio.abstract.label??? [+] [-]Abstract The family Euphylliidae consists of reef-building zooxanthellate scleractinian corals distributed across the Indo-Pacific. Seven extant genera comprising a total of 22 valid species are currently recognised. Recent studies have re-organised the taxonomy of the family at the genus level based on molecular and morphological data, including a comprehensive revision of Euphyllia and the resurrection of Fimbriaphyllia . Here, three mitochondrial loci ( coi , 12S rRNA, and 16S rRNA) were sequenced and morphological examinations were conducted at three scales (macro/micromorphology and microstructure of the skeleton, and polyp morphology) to study the phylogeny and taxonomy of Euphylliidae. We analysed a total of 11 valid species collected from seven Indo-Pacific localities. The monotypic genus Coeloseris , currently in Agariciidae, was also investigated since previous molecular data suggested a close relationship with the Euphylliidae. Molecular and morphological phylogenetic trees were broadly concordant in the definition of genus-level clades. All analysed genera, i.e., Ctenella, Euphyllia, Fimbriaphyllia, Galaxea , and Gyrosmilia , were reciprocally monophyletic based on molecular results. Coeloseris was nested within the family and, therefore, is formally moved into Euphylliidae. Updated morphological diagnoses are provided for each investigated genus. This study further demonstrated that a phylogenetic classification of scleractinian corals can be achieved by applying a combined morpho-molecular approach. Finally, we encourage phylogenetic and taxonomic studies of the euphylliid taxa not yet analysed molecularly, such as the monotypic genera Montigyra and Simplastrea .
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Benzoni F., Arrigoni R., Waheed Z., Stefani F. & Hoeksema B.W. 2014. Phylogenetic relationships and revision of the genus Blastomussa (Cnidaria: Anthozoa: Scleractinia) with description of a new species. Raffles Bulletin of Zoology 62: 358-378
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Huang D., Arrigoni R., Benzoni F., Fukami H., Knowlton N., Smith N.D., Stolarski J., Chou L.M. & Budd A.F. 2016. Taxonomic classification of the reef coral family Lobophylliidae (Cnidaria: Anthozoa: Scleractinia). Zoological Journal of the Linnean Society 178(3): 436-481. DOI:10.1111/zoj.12391
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Terraneo T.I., Berumen M.L., Arrigoni R., Waheed Z., Bouwmeester J., Caragnano A., Stefani F. & Benzoni F. 2014. Pachyseris inattesa sp. n. (Cnidaria, Anthozoa, Scleractinia): a new reef coral species from the Red Sea and its phylogenetic relationships. ZooKeys 433: 1-30. DOI:10.3897/zookeys.433.8036
???msg.biblio.abstract.label??? [+] [-]A new scleractinian coral species, Pachyseris inattesa sp. n., is described from the Red Sea. Despite a superficial resemblance with some species in the agariciid genus Leptoseris with which it has been previously confused, P. inattesa sp. n. has micro-morphological characters typical of the genus Pachyseris. This genus, once part of the Agariciidae, is comprised of five extant species and is widely distributed throughout the tropical Indo-Pacific. It is currently incertae sedis as a result of recent molecular analysis and appears to be closely related to the Euphylliidae. A molecular phylogenetic reconstruction including P. inattesa sp. n., the genus type species P. rugosa, and P. speciosa, all present in the Red Sea, was performed using the mitochondrial intergenic spacer between COI and 16S-rRNA. The results confirm that P. inattesa sp. n. is a monophyletic lineage closely related to the other Pachyseris species examined.
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